MAPT, variants, traits, and what the research shows

MAPT is a human gene with 381 catalogued variants, most strongly linked to neurological conditions and rare diseases across its top-ranked signals.

High-magnitude variants on file
381
With published research summary
28
Trait themes
2

MAPT - what this gene does

Variants catalogued in MAPT cluster around two broad trait themes: neurological conditions and rare diseases.

Key takeaways

  • All 20 of the highest-ranked variants carry a magnitude score of 5.50 - the top tier of signal strength in this dataset.
  • Associations split across two categories: neurological conditions (15 of the top 20 variants) and rare diseases (5 of the top 20).
  • 381 total variants are on file, making this one of the more extensively catalogued gene loci in this database.
  • Per-variant trait labels are not yet available - specific conditions will appear as data are added.
  • These are population-level statistical associations, not deterministic predictions for any individual.

Notable variants

All 20 of the top-ranked variants share a magnitude score of 5.50. Among the neurological-category signals, rs115492908, rs1247408229, rs138293088, rs143624519, and rs148501218 represent prominent entries. On the rare disease side, rs63749855, rs568067396, rs199644237, rs200099007, and rs1401903524 carry equivalent magnitude scores. Because per-variant trait labels are not yet available in this dataset, the specific conditions associated with each rsid cannot be stated here.

Trait associations

Of the top 20 variants, 15 fall under the neurological trait category - including rs115492908, rs1247408229, rs143138715, rs1568327531, rs199759929, and rs377720312, among others - indicating a consistent neurological signal replicated across multiple independent variants in this gene. The five rare disease-category variants - rs1401903524, rs199644237, rs200099007, rs568067396, and rs63749855 - carry the same top-tier magnitude score as their neurological counterparts. The co-occurrence of both categories within this gene's highest-magnitude signals suggests the locus intersects with research across multiple distinct disease areas.

Evidence quality

The 20 highest-magnitude variants on file all score at 5.50 - the strongest tier in the current dataset. However, no per-variant trait labels, effect sizes (such as odds ratios or beta coefficients - measures of how strongly a variant shifts the statistical likelihood of a trait in a study population), or sample size data are currently available for these rsids in this database. With 381 total variants catalogued, coverage of this gene is broad, but the absence of underlying study-level detail means replication status and evidence depth for individual variants cannot be assessed at this time. Treat all associations as preliminary until full trait-level data are confirmed.

What this is NOT

The variants shown here are population-level statistical associations drawn from research studies - they are not deterministic predictors of disease or health outcomes for any individual. This entry does not prescribe, diagnose, or advise on any medical or personal action.


Traits this gene affects

  • neurological
  • rare_disease

Top variants in MAPT

Highest-impact rsids on file, sorted by magnitude. Linked entries have a full research summary; unlinked entries are in the catalog but not yet written up.

rsidMagnitudePrimary trait
rs1154929085.5neurological
rs12474082295.5neurological
rs1382930885.5neurological
rs1389842215.5neurological
rs14019035245.5rare_disease
rs1431387155.5neurological
rs1436245195.5neurological
rs1458979705.5neurological
rs1485012185.5neurological
rs1504206255.5neurological
rs15683275315.5neurological
rs15683398215.5neurological
rs1996442375.5rare_disease
rs1997599295.5neurological
rs2000990075.5rare_disease
rs2018619695.5neurological
rs3688452485.5neurological
rs3777203125.5neurological
rs5680673965.5rare_disease
rs637498555.5rare_disease